HTML Report
Concept
No successful marker extractions can be achieved without successful assemblies. Even though this assemble module offers presets tuned for different data types, it is recommendable to repeat this step some times with different parameters to find optimal settings for your own data.
Captus assists you in this tedious process by automatically generating a useful report for assembly evaluation.
Just open captus-assemble_report.html with your browser (internet connection required) to get general assembly statistics across all your samples!
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The entire report is based on data stored in the following three files:
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All tables and plots in the report are interactive powered by
Plotly.
Visit the following sites once to take full advantage of its interactivity:
Contents
1. Summary Table
This table shows the general assembly statistics for each sample.
All values shown in this table are calculated after filtering by GC content (–max_contig_gc) and/or depth (–min_contig_depth).
Features:
- Switch the
Sort bydropdown to re-sort the table by any column value. - Cells are color-coded according to value (high = green; low = pink).
2. Visual Stats
In addition to the general statistics shown in the Summary Table, this plot shows more detailed statistics before and after filtering for each sample as a bar graph.
Features:
- Switch the dropdown at the x-axis to change the variable to show.
- Click on the legend to toggle hide/show of each data series (only applicable to some variables).
3. Length Distribution
This plot shows the distribution of contig lengths before and after filtering for each sample as a heatmap.
Feature:
- Switch the
Variabledropdown at the colorscale to change the variable to show.
4. Depth Distribution
This plot shows the distribution of contig depths before and after filtering for each sample as a heatmap.
Feature:
- Switch the
Variabledropdown at the colorscale to change the variable to show.
Created by Gentaro Shigita (11.08.2021)
Last modified by Gentaro Shigita (23.12.2024)