Advanced Tutorial

Under construction…

1. Handling different data types
2. Assembling reads cleaned outside Captus
3. Combining all assembled data types
4. Importing pre-assembled sample (e.g., GenBank ref genome)
5. Extracting all marker types simultaneously
6. Discovering new markers by clustering in capture data
7. Adding new markers by clustering unused contigs (capture data)
8. Phylogenetic tree reconstruction using palalogs - ASTRAL-Pro

Created by Gentaro Shigita (01.10.2021)
Last modified by Gentaro Shigita (31.10.2022)